Genetic and Cellular Mechanisms of Pigmentation: Insights from Zebrafish and the Role of the slc45a2 Gene

Gowhar Iqbal

ICAR - Central Institute of Fisheries Education, Panch Marg, Yari Road, Mumbai, 400061, India.

Kriti Kumari

ICAR - Central Institute of Fisheries Education, Panch Marg, Yari Road, Mumbai, 400061, India.

Preeti Maurya

Faculty of Fishery Sciences, West Bengal, University of Animal & Fishery Sciences, Kolkata, West Bengal, India.

Nikita Sahu

ICAR - Central Institute of Fisheries Education, Panch Marg, Yari Road, Mumbai, 400061, India.

Jayashri S. Shelke

ICAR - Central Institute of Fisheries Education, Panch Marg, Yari Road, Mumbai, 400061, India.

Arya Singh

Acharya Narendra Deva University of Agriculture and Technology, Kumarganj, Ayodhya 224229, India.

Shafiya Mushtaq

Faculty of Fisheries-Sher-e Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-K)- Rangil, Ganderbal-191201, India.

Lukram Sushil Singh *

ICAR - Central Institute of Fisheries Education, Panch Marg, Yari Road, Mumbai, 400061, India.

*Author to whom correspondence should be addressed.


Abstract

Among the vertebrate model organisms, zebrafish (Danio rerio) is one of the key models for studying pigmentation, pattern formation and their underlying genetic mechanisms. Their genetic materials show high similarity to humans, with the availability of well-characterised pigment and optical transparency during development. Zebrafish exhibit distinct horizontal stripes at the adult stage as a result of the interaction between three forms of chromatophores: iridophores, xanthophores, and melanophores. This review aims to elucidate the genetic and cellular mechanisms of pigmentation in zebrafish, emphasizing the translational relevance of SLC45A2 to human pigment biology. The dynamic cell-cell communication and self-organisation principles responsible for the formation of pigment patterns have been revealed through studies on chromatophore lineage tracing, mutant analysis and mathematical models. The comparative studies reveal the diversified evolution of chromatophore types among the close relatives of Danio species, highlighting the conserved and divergent mechanisms of pigment differentiation. Zebrafish pigment pattern also influenced the behaviour, neurobiology and environmental adaptation as they affect mate selection, social interactions, camouflage and response to stress. The pigment-assorted traits strengthened by advances in transgenic zebrafish models and behavioural assays are used as readouts for neurological toxicity, social behaviour and colour vision. At the molecular level, slc24a5 and slc45a2 are the conserved pigmentation genes regulating melanosome biogenesis, ion homeostasis and synthesis of melanin. Any alteration in these genes results in pigment disorders like oculocutaneous albinism in both humans and zebrafish. However, natural allelic variation in alc45a2 leads to adaptive changes in human skin colour. Research demonstrates that loss of function of slc45a2 due to mutation highlights its role in regulating the melanosome pH, a requirement for maintaining proper tyrosine function and eumelanin formation. Previous studies revealed valuable understanding of the cellular, genetic and evolutionary basis of pigmentation, providing it as a model for understanding pigment biology, human disorders and adaptive colouration mechanisms.

Keywords: Model organism, chromatophores, genes, zebra fish, pigmentation


How to Cite

Iqbal, Gowhar, Kriti Kumari, Preeti Maurya, Nikita Sahu, Jayashri S. Shelke, Arya Singh, Shafiya Mushtaq, and Lukram Sushil Singh. 2025. “Genetic and Cellular Mechanisms of Pigmentation: Insights from Zebrafish and the Role of the slc45a2 Gene”. UTTAR PRADESH JOURNAL OF ZOOLOGY 46 (20):39-48. https://doi.org/10.56557/upjoz/2025/v46i205298.

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